Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2231 domain-containing protein | YT1_RS20680 | Not Available | Positive | 4300990 - 4301628 | 21467.1 |
| pfkb family carbohydrate kinase | YT1_RS20685 | Not Available | Positive | 4301703 - 4302677 | 33489.8 |
| 5'/3'-nucleotidase sure | YT1_RS20690 | Not Available | Positive | 4302682 - 4303473 | 27098.6 |
| zinc-dependent alcohol dehydrogenase | YT1_RS20695 | Not Available | Negative | 4303504 - 4304685 | 42157.7 |
| prc-barrel domain-containing protein | YT1_RS20700 | Not Available | Negative | 4304871 - 4305188 | 12192.8 |
| hypothetical protein | YT1_RS20705 | Not Available | Negative | 4305175 - 4305579 | 14682.5 |
| nramp family divalent metal transporter | YT1_RS20710 | Not Available | Negative | 4305576 - 4306805 | 42417.9 |
| hypothetical protein | YT1_RS20715 | Not Available | Negative | 4306802 - 4307260 | 15034.6 |
| dna topoisomerase ib | YT1_RS20720 | Not Available | Negative | 4307351 - 4308358 | 37498.7 |
| fad-dependent oxidoreductase | YT1_RS20725 | Not Available | Positive | 4308472 - 4310010 | 54686.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


