Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | YT1_RS20630 | Not Available | Negative | 4293376 - 4294173 | 28230.3 |
| iron-containing redox enzyme family protein | YT1_RS20635 | Not Available | Positive | 4294365 - 4295378 | 36987.7 |
| duf5709 domain-containing protein | YT1_RS20640 | Not Available | Negative | 4295440 - 4295853 | 14976.4 |
| duf6131 family protein | YT1_RS27365 | Not Available | Positive | 4296019 - 4296174 | 5381.17 |
| cdgsh iron-sulfur domain-containing protein | YT1_RS20650 | Not Available | Negative | 4296287 - 4296496 | 7858.41 |
| hemk2/mtq2 family protein methyltransferase | YT1_RS20655 | Not Available | Negative | 4296573 - 4297214 | 22720.3 |
| hypothetical protein | YT1_RS20660 | Not Available | Negative | 4297317 - 4297682 | 11766.2 |
| phytoene desaturase family protein | YT1_RS20665 | Not Available | Negative | 4297752 - 4299347 | 56511.1 |
| srpbcc family protein | YT1_RS20670 | Not Available | Negative | 4299344 - 4299802 | 16581.9 |
| nad-dependent epimerase/dehydratase family protein | YT1_RS20675 | Not Available | Negative | 4299838 - 4300917 | 38076.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


