Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aurf n-oxygenase family protein | YT1_RS20580 | Not Available | Negative | 4286300 - 4287202 | 34065.7 |
| duf2516 family protein | YT1_RS20585 | Not Available | Negative | 4287285 - 4287578 | 10522.3 |
| hypothetical protein | YT1_RS20590 | Not Available | Negative | 4287654 - 4288493 | 29132.0 |
| helix-turn-helix domain-containing protein | YT1_RS20595 | Not Available | Negative | 4288495 - 4289028 | 18759.8 |
| duf445 domain-containing protein | YT1_RS20600 | Not Available | Negative | 4289089 - 4290342 | 47090.6 |
| tetr/acrr family transcriptional regulator | YT1_RS20605 | Not Available | Positive | 4290495 - 4291235 | 27097.2 |
| duf4873 domain-containing protein | YT1_RS20610 | Not Available | Positive | 4291277 - 4291621 | 12160.0 |
| ppk2 family polyphosphate kinase | YT1_RS20615 | Not Available | Positive | 4291652 - 4292512 | 32735.9 |
| hypothetical protein | YT1_RS20620 | Not Available | Negative | 4292526 - 4292747 | 7663.48 |
| duf6328 family protein | YT1_RS20625 | Not Available | Positive | 4292881 - 4293369 | 18100.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


