Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tocopherol cyclase family protein | YT1_RS20475 | Not Available | Positive | 4263488 - 4264522 | 36950.4 |
| rok family protein | YT1_RS20480 | Not Available | Negative | 4264601 - 4265857 | 43030.6 |
| taud/tfda dioxygenase family protein | YT1_RS20490 | Not Available | Positive | 4266253 - 4267209 | 35067.8 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS20495 | Not Available | Positive | 4267272 - 4268015 | 26316.3 |
| mfs transporter | YT1_RS20500 | Not Available | Negative | 4268229 - 4269827 | 55492.8 |
| hypothetical protein | YT1_RS27730 | Not Available | Negative | 4269948 - 4270157 | 7141.52 |
| ig-like domain-containing protein | YT1_RS20510 | Not Available | Negative | 4270679 - 4271791 | 38937.0 |
| udp-n-acetylmuramate dehydrogenase | YT1_RS20515 | Not Available | Negative | 4271921 - 4272967 | 36371.4 |
| duf2505 domain-containing protein | YT1_RS20520 | Not Available | Positive | 4273039 - 4273542 | 18167.3 |
| duf2505 domain-containing protein | YT1_RS20525 | Not Available | Positive | 4273690 - 4274196 | 18974.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


