Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydrolase domain-containing protein | YT1_RS20425 | Not Available | Positive | 4254352 - 4255518 | 41740.7 |
| transglycosylase family protein | YT1_RS20430 | Not Available | Negative | 4255603 - 4255941 | 11576.2 |
| ybjn domain-containing protein | YT1_RS20435 | Not Available | Negative | 4256321 - 4256839 | 19633.4 |
| d-inositol-3-phosphate glycosyltransferase | YT1_RS20440 | Not Available | Negative | 4256836 - 4258173 | 47189.1 |
| winged helix-turn-helix transcriptional regulator | YT1_RS20445 | Not Available | Negative | 4258281 - 4258982 | 26407.0 |
| acyl-coa dehydrogenase family protein | YT1_RS20450 | Not Available | Positive | 4259046 - 4260224 | 41659.8 |
| alpha/beta fold hydrolase | YT1_RS20455 | Not Available | Negative | 4260199 - 4261020 | 28451.5 |
| mfs transporter | YT1_RS20460 | Not Available | Negative | 4261026 - 4262216 | 39698.0 |
| pig-l family deacetylase | YT1_RS20465 | Not Available | Positive | 4262215 - 4262997 | 27402.3 |
| srpbcc family protein | YT1_RS20470 | Not Available | Positive | 4263021 - 4263482 | 16634.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


