Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS20375 | Not Available | Negative | 4241871 - 4242992 | 38590.1 |
| ppx/gppa phosphatase family protein | YT1_RS20380 | Not Available | Negative | 4242989 - 4243942 | 33779.4 |
| hypothetical protein | YT1_RS20385 | Not Available | Positive | 4243988 - 4244818 | 30477.9 |
| response regulator transcription factor | YT1_RS20390 | Not Available | Negative | 4244800 - 4245489 | 25126.3 |
| sensor histidine kinase | YT1_RS20395 | Not Available | Negative | 4245594 - 4246781 | 42654.9 |
| phosphoglyceromutase | YT1_RS20400 | Not Available | Negative | 4246927 - 4247673 | 27509.4 |
| fad-dependent oxidoreductase | YT1_RS20405 | Not Available | Positive | 4247805 - 4249571 | 63011.8 |
| fad-dependent oxidoreductase | YT1_RS20410 | Not Available | Positive | 4249689 - 4251425 | 60426.4 |
| amp-binding protein | YT1_RS20415 | Not Available | Negative | 4251430 - 4253016 | 56288.5 |
| helix-turn-helix transcriptional regulator | YT1_RS20420 | Not Available | Positive | 4253214 - 4254230 | 37273.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


