Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copd family protein | YT1_RS02810 | Not Available | Negative | 377610 - 378557 | 32113.5 |
| copper resistance protein copc | YT1_RS02815 | Not Available | Negative | 378574 - 379149 | 19115.8 |
| hypothetical protein | YT1_RS02820 | Not Available | Negative | 379181 - 379666 | 15539.3 |
| duf6474 family protein | YT1_RS02825 | Not Available | Negative | 379678 - 380352 | 24448.9 |
| tm0106 family recb-like putative nuclease | YT1_RS02830 | Not Available | Positive | 380459 - 382051 | 59109.3 |
| alpha/beta hydrolase | YT1_RS02835 | Not Available | Negative | 382101 - 382916 | 28895.0 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS02840 | Not Available | Negative | 382982 - 383749 | 26427.7 |
| upf0158 family protein | YT1_RS02845 | Not Available | Positive | 383863 - 385098 | 45159.2 |
| mfs transporter | YT1_RS02850 | Not Available | Negative | 385305 - 386525 | 41504.7 |
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS02855 | Not Available | Negative | 386522 - 386941 | 15458.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


