Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pqq-dependent sugar dehydrogenase | YT1_RS20270 | Not Available | Negative | 4224459 - 4225613 | 40341.5 |
| metal-sensitive transcriptional regulator | YT1_RS20275 | Not Available | Negative | 4225634 - 4225918 | 10168.4 |
| duf3093 family protein | YT1_RS20280 | Not Available | Negative | 4225944 - 4226429 | 17644.5 |
| hypothetical protein | YT1_RS20285 | Not Available | Negative | 4226634 - 4227113 | 17236.8 |
| porphobilinogen synthase | YT1_RS20290 | Not Available | Negative | 4227194 - 4228171 | 34588.8 |
| uroporphyrinogen-iii synthase | YT1_RS20295 | Not Available | Negative | 4228243 - 4229808 | 55034.8 |
| hydroxymethylbilane synthase | YT1_RS20300 | Not Available | Negative | 4229872 - 4230885 | 34752.5 |
| glutamyl-trna reductase | YT1_RS20305 | Not Available | Negative | 4230882 - 4232336 | 50395.2 |
| redox-sensing transcriptional repressor rex | YT1_RS27495 | Not Available | Negative | 4232333 - 4233325 | 33519.8 |
| glutaredoxin family protein | YT1_RS20320 | Not Available | Negative | 4233486 - 4233776 | 10218.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


