Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c biogenesis ccda family protein | YT1_RS20220 | Not Available | Negative | 4213288 - 4214148 | 28631.7 |
| tlpa disulfide reductase family protein | YT1_RS20225 | Not Available | Negative | 4214150 - 4214764 | 21904.5 |
| histidine phosphatase family protein | YT1_RS20230 | Not Available | Negative | 4214761 - 4215411 | 23624.0 |
| glutamate-1-semialdehyde 2,1-aminomutase | YT1_RS20235 | Not Available | Negative | 4215464 - 4216786 | 44910.2 |
| atp-binding protein | YT1_RS20240 | Not Available | Positive | 4216868 - 4218436 | 55486.4 |
| acyl-coa dehydrogenase | YT1_RS20245 | Not Available | Positive | 4218446 - 4220383 | 70488.6 |
| cyclase family protein | YT1_RS20250 | Not Available | Negative | 4220406 - 4221278 | 29999.8 |
| pqq-dependent sugar dehydrogenase | YT1_RS20255 | Not Available | Negative | 4221292 - 4222434 | 39602.6 |
| mfs transporter | YT1_RS20260 | Not Available | Negative | 4222506 - 4223948 | 47917.8 |
| redox-sensitive transcriptional activator soxr | YT1_RS20265 | Not Available | Positive | 4224007 - 4224462 | 16800.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


