Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| clp protease n-terminal domain-containing protein | YT1_RS20170 | Not Available | Negative | 4205673 - 4206227 | 20046.1 |
| hypothetical protein | YT1_RS20175 | Not Available | Negative | 4206234 - 4206449 | 7897.38 |
| lysophospholipid acyltransferase family protein | YT1_RS20180 | Not Available | Negative | 4206517 - 4207254 | 26992.5 |
| plp-dependent cysteine synthase family protein | YT1_RS20185 | Not Available | Negative | 4207320 - 4208411 | 39490.5 |
| duf4229 domain-containing protein | YT1_RS20190 | Not Available | Negative | 4208412 - 4208681 | 9776.41 |
| bldc family transcriptional regulator | YT1_RS20195 | Not Available | Positive | 4208925 - 4209134 | 7497.02 |
| hypothetical protein | YT1_RS20200 | Not Available | Positive | 4209258 - 4209461 | 7423.88 |
| helix-turn-helix transcriptional regulator | YT1_RS20205 | Not Available | Negative | 4209589 - 4210539 | 34343.8 |
| c-type cytochrome biogenesis protein ccsb | YT1_RS20210 | Not Available | Negative | 4210635 - 4211618 | 35657.1 |
| cytochrome c biogenesis protein resb | YT1_RS20215 | Not Available | Negative | 4211615 - 4213291 | 60747.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


