Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavin reductase family protein | YT1_RS20070 | Not Available | Positive | 4189313 - 4189900 | 21119.2 |
| siderophore-interacting protein | YT1_RS20075 | Not Available | Positive | 4189977 - 4190816 | 29820.4 |
| duf6918 family protein | YT1_RS20080 | Not Available | Negative | 4190870 - 4191310 | 15096.1 |
| o-succinylbenzoate synthase | YT1_RS20085 | Not Available | Negative | 4191381 - 4192364 | 34394.3 |
| paai family thioesterase | YT1_RS20090 | Not Available | Negative | 4192361 - 4192999 | 23276.8 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | YT1_RS20095 | Not Available | Positive | 4193151 - 4194044 | 33258.2 |
| hypothetical protein | YT1_RS20100 | Not Available | Positive | 4194169 - 4194615 | 16936.8 |
| voc family protein | YT1_RS20105 | Not Available | Positive | 4194617 - 4194997 | 14088.9 |
| hypothetical protein | YT1_RS20110 | Not Available | Negative | 4195049 - 4195408 | 12771.7 |
| abc transporter atp-binding protein | YT1_RS20115 | Not Available | Negative | 4195411 - 4196154 | 25772.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


