Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-thr | Not Available | Not Available | Positive | 4180643 - 4180715 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 4180942 - 4181027 | Not Available |
| yajq family cyclic di-gmp-binding protein | YT1_RS20030 | Not Available | Positive | 4181175 - 4181666 | 18018.3 |
| zinc metalloprotease htpx | YT1_RS20035 | Not Available | Negative | 4181742 - 4182602 | 30786.8 |
| polyprenyl synthetase family protein | YT1_RS20040 | Not Available | Negative | 4182707 - 4183753 | 36494.1 |
| geranylgeranyl reductase family protein | YT1_RS20045 | Not Available | Positive | 4183891 - 4185162 | 44671.2 |
| demethylmenaquinone methyltransferase | YT1_RS20050 | Not Available | Negative | 4185174 - 4185872 | 25266.3 |
| glycosyltransferase family 4 protein | YT1_RS20055 | Not Available | Negative | 4185937 - 4187079 | 40095.2 |
| duf3592 domain-containing protein | YT1_RS20060 | Not Available | Negative | 4187168 - 4187581 | 14427.6 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | YT1_RS20065 | Not Available | Negative | 4187589 - 4189208 | 56359.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


