Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr03084 family metal-binding protein | YT1_RS19820 | Not Available | Negative | 4140466 - 4141257 | 28315.2 |
| eama family transporter | YT1_RS19825 | Not Available | Positive | 4141403 - 4142284 | 29026.8 |
| mfs transporter | YT1_RS19830 | Not Available | Negative | 4142310 - 4143950 | 56122.3 |
| lysr family transcriptional regulator | YT1_RS19835 | Not Available | Negative | 4144069 - 4144986 | 32281.1 |
| paai family thioesterase | YT1_RS19840 | Not Available | Positive | 4145050 - 4145481 | 14834.7 |
| duf202 domain-containing protein | YT1_RS19845 | Not Available | Negative | 4145557 - 4145877 | 11499.5 |
| yidh family protein | YT1_RS19850 | Not Available | Negative | 4145915 - 4146283 | 13010.3 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | YT1_RS19855 | Not Available | Negative | 4146343 - 4146795 | 14631.1 |
| duf6529 family protein | YT1_RS19860 | Not Available | Negative | 4146838 - 4147401 | 19698.5 |
| hypothetical protein | YT1_RS19865 | Not Available | Negative | 4147437 - 4148075 | 21133.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


