Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | YT1_RS02760 | Not Available | Positive | 367199 - 367792 | 21295.4 |
| duf1540 domain-containing protein | YT1_RS02765 | Not Available | Negative | 367806 - 368108 | 10518.2 |
| tetr/acrr family transcriptional regulator | YT1_RS02770 | Not Available | Positive | 368337 - 368963 | 23769.2 |
| acetyl-coa carboxylase family protein | YT1_RS02775 | Not Available | Positive | 368995 - 372183 | 110557.0 |
| udgx family uracil-dna binding protein | YT1_RS02780 | Not Available | Positive | 372228 - 372866 | 22364.7 |
| alpha/beta hydrolase | YT1_RS02785 | Not Available | Negative | 372925 - 374496 | 56513.3 |
| pldc n-terminal domain-containing protein | YT1_RS02790 | Not Available | Negative | 374616 - 374996 | 14090.2 |
| helix-turn-helix domain-containing protein | YT1_RS02795 | Not Available | Negative | 375230 - 376147 | 33596.6 |
| duf998 domain-containing protein | YT1_RS02800 | Not Available | Positive | 376354 - 377091 | 25817.6 |
| helix-turn-helix transcriptional regulator | YT1_RS02805 | Not Available | Negative | 377044 - 377598 | 19791.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


