Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS19665 | Not Available | Positive | 4110414 - 4110773 | 13903.2 |
| carboxymuconolactone decarboxylase family protein | YT1_RS19670 | Not Available | Negative | 4110754 - 4111380 | 22572.3 |
| madc family vwa domain-containing protein | YT1_RS19675 | Not Available | Negative | 4111555 - 4113111 | 55705.9 |
| madb family aaa-type atpase | YT1_RS19680 | Not Available | Negative | 4113116 - 4114219 | 39630.3 |
| ndma-dependent methanol dehydrogenase | YT1_RS19685 | Not Available | Negative | 4114305 - 4115576 | 46483.9 |
| ferredoxin--nadp reductase | YT1_RS19690 | Not Available | Positive | 4115895 - 4116950 | 37773.7 |
| mfs transporter | YT1_RS19695 | Not Available | Negative | 4116970 - 4118217 | 41681.0 |
| spw repeat protein | YT1_RS19700 | Not Available | Positive | 4118445 - 4118810 | 12875.9 |
| tetr/acrr family transcriptional regulator | YT1_RS19705 | Not Available | Positive | 4118916 - 4119527 | 21733.2 |
| glutamate racemase | YT1_RS19710 | Not Available | Negative | 4119541 - 4120356 | 27958.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


