Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | YT1_RS19565 | Not Available | Positive | 4089058 - 4089411 | 12490.1 |
| duf1648 domain-containing protein | YT1_RS19570 | Not Available | Positive | 4089408 - 4090421 | 33554.1 |
| hd domain-containing phosphohydrolase | YT1_RS19575 | Not Available | Negative | 4090497 - 4091960 | 53251.9 |
| hypothetical protein | YT1_RS19580 | Not Available | Positive | 4092191 - 4092922 | 25978.8 |
| hypothetical protein | YT1_RS19585 | Not Available | Positive | 4093040 - 4093405 | 13206.3 |
| mycofactocin system fadh/oye family oxidoreductase 2 | YT1_RS19590 | Not Available | Negative | 4093465 - 4095435 | 69356.9 |
| mycofactocin-coupled sdr family oxidoreductase | YT1_RS19595 | Not Available | Negative | 4095432 - 4096244 | 28925.5 |
| mycofactocin system fadh/oye family oxidoreductase 1 | YT1_RS19600 | Not Available | Negative | 4096281 - 4098179 | 65622.3 |
| pre-mycofactocin synthase mftd | YT1_RS19605 | Not Available | Negative | 4098196 - 4099371 | 41295.6 |
| mycofactocin radical sam maturase | YT1_RS19610 | Not Available | Negative | 4099409 - 4100656 | 44945.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


