Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chat domain-containing protein | YT1_RS19515 | Not Available | Positive | 4074438 - 4076969 | 91033.9 |
| hypothetical protein | YT1_RS19520 | Not Available | Positive | 4077385 - 4078191 | 29298.9 |
| chat domain-containing protein | YT1_RS19525 | Not Available | Positive | 4078247 - 4080673 | 90899.2 |
| is3 family transposase | YT1_RS19530 | Not Available | Negative | 4080812 - 4082232 | 52518.9 |
| hypothetical protein | YT1_RS19535 | Not Available | Positive | 4082562 - 4082951 | 14606.2 |
| lysr family transcriptional regulator | YT1_RS19540 | Not Available | Negative | 4082967 - 4083875 | 32690.7 |
| sfnb family sulfur acquisition oxidoreductase | YT1_RS19545 | Not Available | Positive | 4084288 - 4085532 | 44141.0 |
| helix-turn-helix transcriptional regulator | YT1_RS19550 | Not Available | Positive | 4085576 - 4086430 | 31165.8 |
| helix-turn-helix transcriptional regulator | YT1_RS19555 | Not Available | Positive | 4086490 - 4087285 | 29509.3 |
| helix-turn-helix transcriptional regulator | YT1_RS19560 | Not Available | Positive | 4087931 - 4089004 | 39664.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


