Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mycofactocin biosynthesis glycosyltransferase mftf | YT1_RS19425 | Not Available | Negative | 4054675 - 4056063 | 49671.0 |
| mycofactocin biosynthesis peptidyl-dipeptidase mfte | YT1_RS19430 | Not Available | Negative | 4056060 - 4056746 | 24116.6 |
| dihydrofolate reductase family protein | YT1_RS19435 | Not Available | Positive | 4056967 - 4057332 | 12770.3 |
| endonuclease/exonuclease/phosphatase family protein | YT1_RS19440 | Not Available | Negative | 4057338 - 4058339 | 34372.2 |
| ycii family protein | YT1_RS19445 | Not Available | Positive | 4058502 - 4058846 | 11998.2 |
| rna polymerase sigma factor | YT1_RS19450 | Not Available | Positive | 4058843 - 4060114 | 45736.9 |
| hypothetical protein | YT1_RS19455 | Not Available | Negative | 4060182 - 4060970 | 27235.4 |
| gnat family n-acetyltransferase | YT1_RS19460 | Not Available | Positive | 4061003 - 4061998 | 36775.8 |
| alpha/beta fold hydrolase | YT1_RS19465 | Not Available | Negative | 4062015 - 4062833 | 29001.7 |
| tetr/acrr family transcriptional regulator | YT1_RS19470 | Not Available | Positive | 4062889 - 4063512 | 22434.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


