Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease/exonuclease/phosphatase family protein | YT1_RS02710 | Not Available | Negative | 356495 - 357211 | 26169.1 |
| helix-turn-helix domain-containing protein | YT1_RS02715 | Not Available | Positive | 357387 - 358031 | 22855.2 |
| hypothetical protein | YT1_RS02720 | Not Available | Negative | 358411 - 358821 | 14448.5 |
| gaf and antar domain-containing protein | YT1_RS02725 | Not Available | Negative | 358872 - 359594 | 25381.5 |
| atp-binding protein | YT1_RS02730 | Not Available | Positive | 359878 - 360327 | 16150.1 |
| succinic semialdehyde dehydrogenase | YT1_RS02735 | Not Available | Positive | 361067 - 362620 | 55292.4 |
| ggdef domain-containing protein | YT1_RS02740 | Not Available | Positive | 362678 - 364009 | 46976.1 |
| capa family protein | YT1_RS02745 | Not Available | Positive | 364060 - 365163 | 39800.3 |
| duf427 domain-containing protein | YT1_RS02750 | Not Available | Negative | 365174 - 365500 | 11774.0 |
| flavin-containing monooxygenase | YT1_RS02755 | Not Available | Negative | 365631 - 367106 | 54354.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


