Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l4 | YT1_RS19225 | Not Available | Negative | 3926733 - 3927416 | 24312.8 |
| 50s ribosomal protein l3 | YT1_RS19230 | Not Available | Negative | 3927413 - 3928066 | 22744.5 |
| 30s ribosomal protein s10 | YT1_RS19235 | Not Available | Negative | 3928112 - 3928417 | 11503.1 |
| amidase | YT1_RS19240 | Not Available | Negative | 3928853 - 3930517 | 57083.0 |
| gntr family transcriptional regulator | YT1_RS19245 | Not Available | Positive | 3930660 - 3931355 | 25369.0 |
| daunorubicin resistance protein drra family abc transporter atp-binding protein | YT1_RS19250 | Not Available | Positive | 3931487 - 3932488 | 35437.6 |
| abc transporter permease | YT1_RS19255 | Not Available | Positive | 3932485 - 3933336 | 30518.8 |
| abc transporter permease | YT1_RS19260 | Not Available | Positive | 3933344 - 3934201 | 30623.5 |
| lipase family alpha/beta hydrolase | YT1_RS19265 | Not Available | Positive | 3934321 - 3935304 | 34359.7 |
| alpha/beta hydrolase | YT1_RS19270 | Not Available | Negative | 3935382 - 3936410 | 36670.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


