Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine-hydrolyzing gmp synthase | YT1_RS18880 | Not Available | Negative | 3864945 - 3866516 | 56046.7 |
| gmc oxidoreductase | YT1_RS18885 | Not Available | Negative | 3866565 - 3868298 | 62049.1 |
| guab3 family imp dehydrogenase-related protein | YT1_RS18890 | Not Available | Negative | 3868504 - 3869643 | 39531.1 |
| imp dehydrogenase | YT1_RS18895 | Not Available | Negative | 3869731 - 3871254 | 52586.3 |
| duf5319 domain-containing protein | YT1_RS18900 | Not Available | Positive | 3871531 - 3871941 | 14944.3 |
| anti-sigma-d factor rsda | YT1_RS18905 | Not Available | Negative | 3872008 - 3873081 | 36650.5 |
| sigma-70 family rna polymerase sigma factor | YT1_RS18910 | Not Available | Negative | 3873074 - 3873652 | 20615.8 |
| hypothetical protein | YT1_RS18915 | Not Available | Negative | 3873774 - 3874616 | 29357.0 |
| whib family transcriptional regulator | YT1_RS18920 | Not Available | Positive | 3875117 - 3875410 | 11241.5 |
| chaperonin groel | YT1_RS18925 | Not Available | Negative | 3875522 - 3877138 | 55886.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


