Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | YT1_RS18780 | Not Available | Positive | 3844290 - 3845873 | 54562.1 |
| mmpl family transporter | YT1_RS18785 | Not Available | Positive | 3845931 - 3848054 | 73959.0 |
| sdr family oxidoreductase | YT1_RS18790 | Not Available | Positive | 3848087 - 3850066 | 70989.5 |
| sucrase ferredoxin | YT1_RS18795 | Not Available | Negative | 3850125 - 3850997 | 30537.4 |
| ydei/ompd-associated family protein | YT1_RS18800 | Not Available | Negative | 3851002 - 3851595 | 22585.4 |
| hypothetical protein | YT1_RS18805 | Not Available | Negative | 3851598 - 3852119 | 18845.9 |
| hypothetical protein | YT1_RS18810 | Not Available | Negative | 3852238 - 3852720 | 16724.7 |
| dip1984 family protein | YT1_RS18815 | Not Available | Negative | 3853226 - 3853693 | 17427.6 |
| hnh endonuclease | YT1_RS18820 | Not Available | Negative | 3853723 - 3854823 | 39724.7 |
| nucleoside triphosphate pyrophosphohydrolase | YT1_RS18825 | Not Available | Positive | 3854856 - 3855158 | 11268.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


