Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isopentenyl-diphosphate delta-isomerase | YT1_RS18730 | Not Available | Positive | 3834001 - 3834522 | 18918.6 |
| hypothetical protein | YT1_RS18735 | Not Available | Positive | 3834752 - 3834952 | 6280.96 |
| rhodanese-like domain-containing protein | YT1_RS18740 | Not Available | Negative | 3834988 - 3835296 | 10614.6 |
| duf4349 domain-containing protein | YT1_RS18745 | Not Available | Negative | 3835289 - 3836128 | 29034.6 |
| error-prone dna polymerase | YT1_RS18750 | Not Available | Negative | 3836140 - 3839400 | 118147.0 |
| rna polymerase sigma-70 factor | YT1_RS18755 | Not Available | Negative | 3839478 - 3840341 | 31304.9 |
| carboxymuconolactone decarboxylase family protein | YT1_RS18760 | Not Available | Negative | 3840338 - 3840916 | 21133.5 |
| scbr family autoregulator-binding transcription factor | YT1_RS18765 | Not Available | Positive | 3840974 - 3841657 | 24708.5 |
| helix-turn-helix transcriptional regulator | YT1_RS18770 | Not Available | Positive | 3841831 - 3843365 | 52397.6 |
| abc transporter atp-binding protein | YT1_RS18775 | Not Available | Positive | 3843376 - 3844293 | 32983.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


