Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | YT1_RS18680 | Not Available | Positive | 3824249 - 3824845 | 21503.4 |
| inner membrane protein yhjd | YT1_RS18685 | Not Available | Negative | 3824790 - 3825854 | 37334.8 |
| tryptophan--trna ligase | YT1_RS18690 | Not Available | Negative | 3825913 - 3826953 | 38091.4 |
| exodeoxyribonuclease iii | YT1_RS18695 | Not Available | Negative | 3827026 - 3827829 | 29273.2 |
| nadp-dependent isocitrate dehydrogenase | YT1_RS18700 | Not Available | Negative | 3827915 - 3829132 | 45376.9 |
| bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase | YT1_RS18705 | Not Available | Positive | 3829601 - 3830926 | 46725.1 |
| homoserine o-acetyltransferase metx | YT1_RS18710 | Not Available | Positive | 3830923 - 3832050 | 39338.4 |
| duf3017 domain-containing protein | YT1_RS18715 | Not Available | Negative | 3832087 - 3832389 | 10579.3 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase | YT1_RS18720 | Not Available | Negative | 3832394 - 3833248 | 29555.7 |
| trna (cytidine(34)-2'-o)-methyltransferase | YT1_RS18725 | Not Available | Positive | 3833412 - 3833876 | 17017.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


