Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | YT1_RS18630 | Not Available | Negative | 3813344 - 3815434 | 77034.5 |
| adenosine deaminase | YT1_RS18635 | Not Available | Negative | 3815474 - 3816571 | 40160.9 |
| thymidine phosphorylase | YT1_RS18640 | Not Available | Negative | 3816589 - 3817872 | 44374.4 |
| cytidine deaminase | YT1_RS18645 | Not Available | Negative | 3817865 - 3818287 | 14574.5 |
| succinate dehydrogenase, cytochrome b556 subunit | YT1_RS18650 | Not Available | Positive | 3818541 - 3818945 | 15199.8 |
| succinate dehydrogenase hydrophobic membrane anchor subunit | YT1_RS18655 | Not Available | Positive | 3818947 - 3819387 | 16674.5 |
| succinate dehydrogenase flavoprotein subunit | YT1_RS18660 | Not Available | Positive | 3819403 - 3821154 | 64508.7 |
| succinate dehydrogenase iron-sulfur subunit | YT1_RS18665 | Not Available | Positive | 3821154 - 3821930 | 28767.7 |
| nad(p)-dependent alcohol dehydrogenase | YT1_RS18670 | Not Available | Negative | 3821989 - 3823029 | 35451.6 |
| nadp-dependent oxidoreductase | YT1_RS18675 | Not Available | Negative | 3823119 - 3824126 | 35654.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


