Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | YT1_RS18530 | Not Available | Negative | 3794495 - 3795949 | 51048.1 |
| iron abc transporter substrate-binding protein | YT1_RS18535 | Not Available | Negative | 3796054 - 3797088 | 36313.3 |
| m20 family metallopeptidase | YT1_RS18540 | Not Available | Negative | 3797144 - 3798298 | 40556.7 |
| m20 family metallopeptidase | YT1_RS18545 | Not Available | Negative | 3798295 - 3799455 | 39322.5 |
| enoyl-coa hydratase/isomerase family protein | YT1_RS18550 | Not Available | Negative | 3799490 - 3800188 | 24646.3 |
| purine-nucleoside phosphorylase | YT1_RS18555 | Not Available | Positive | 3800254 - 3801066 | 27840.3 |
| phospho-sugar mutase | YT1_RS18560 | Not Available | Positive | 3801063 - 3802538 | 50450.0 |
| mspa family porin | YT1_RS18565 | Not Available | Negative | 3802608 - 3803303 | 23917.0 |
| uracil phosphoribosyltransferase | YT1_RS18570 | Not Available | Negative | 3803669 - 3804292 | 22172.8 |
| abc transporter permease | YT1_RS18575 | Not Available | Positive | 3804469 - 3805110 | 21746.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


