Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase family protein | YT1_RS18430 | Not Available | Positive | 3771487 - 3772992 | 52643.8 |
| duf4429 domain-containing protein | YT1_RS18435 | Not Available | Positive | 3772989 - 3774149 | 41725.9 |
| pyridoxamine 5'-phosphate oxidase family protein | YT1_RS18440 | Not Available | Negative | 3774160 - 3774594 | 15804.0 |
| hypothetical protein | YT1_RS18445 | Not Available | Negative | 3774591 - 3774962 | 13894.3 |
| hypothetical protein | YT1_RS18450 | Not Available | Negative | 3774985 - 3775941 | 35065.3 |
| amp-binding protein | YT1_RS18455 | Not Available | Positive | 3776080 - 3777624 | 56642.9 |
| fad-binding oxidoreductase | YT1_RS18460 | Not Available | Positive | 3777621 - 3778991 | 47124.5 |
| hypothetical protein | YT1_RS18465 | Not Available | Positive | 3779036 - 3779593 | 20145.9 |
| atp-dependent helicase | YT1_RS18470 | Not Available | Positive | 3779662 - 3784179 | 161714.0 |
| dna-formamidopyrimidine glycosylase family protein | YT1_RS18475 | Not Available | Positive | 3784179 - 3784973 | 28716.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


