Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose reductase | YT1_RS18280 | Not Available | Negative | 3745308 - 3746168 | 29555.8 |
| lcp family protein | YT1_RS18285 | Not Available | Positive | 3746300 - 3747829 | 51804.6 |
| tigr03089 family protein | YT1_RS18290 | Not Available | Positive | 3747844 - 3748551 | 24305.5 |
| hypothetical protein | YT1_RS18295 | Not Available | Negative | 3748529 - 3748903 | 13662.2 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | YT1_RS18300 | Not Available | Negative | 3748986 - 3749489 | 17388.3 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | YT1_RS18305 | Not Available | Negative | 3749482 - 3750684 | 43002.2 |
| gtra family protein | YT1_RS18310 | Not Available | Positive | 3750913 - 3751461 | 20527.0 |
| sensor histidine kinase | YT1_RS18315 | Not Available | Negative | 3751498 - 3752802 | 46418.6 |
| response regulator transcription factor | YT1_RS18320 | Not Available | Negative | 3752813 - 3753496 | 24898.9 |
| ph domain-containing protein | YT1_RS18325 | Not Available | Negative | 3753535 - 3754080 | 19892.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


