Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome hibernation-promoting factor, hpf/yfia family | YT1_RS18180 | Not Available | Negative | 3725253 - 3725927 | 25362.8 |
| comf family protein | YT1_RS18185 | Not Available | Negative | 3726217 - 3726861 | 22261.3 |
| mtrab system accessory lipoprotein lpqb | YT1_RS18190 | Not Available | Negative | 3726903 - 3728669 | 61676.1 |
| mtrab system histidine kinase mtrb | YT1_RS18195 | Not Available | Negative | 3728666 - 3730411 | 62526.1 |
| mtrab system response regulator mtra | YT1_RS18200 | Not Available | Negative | 3730408 - 3731094 | 25170.8 |
| dtmp kinase | YT1_RS18205 | Not Available | Negative | 3731091 - 3731756 | 24245.5 |
| adenosylhomocysteinase | YT1_RS18210 | Not Available | Negative | 3731782 - 3733269 | 54126.4 |
| tetr/acrr family transcriptional regulator | YT1_RS18215 | Not Available | Negative | 3733328 - 3733990 | 24103.5 |
| mannose-6-phosphate isomerase, class i | YT1_RS18220 | Not Available | Negative | 3734059 - 3735330 | 44267.1 |
| hypothetical protein | YT1_RS18225 | Not Available | Negative | 3735330 - 3736415 | 37143.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


