Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoshikimate 1-carboxyvinyltransferase | YT1_RS18130 | Not Available | Positive | 3712960 - 3714228 | 43657.2 |
| ribosome small subunit-dependent gtpase a | YT1_RS18135 | Not Available | Positive | 3714195 - 3715214 | 35841.8 |
| fatty acid desaturase family protein | YT1_RS18140 | Not Available | Negative | 3715349 - 3716584 | 46765.7 |
| fatty acid desaturase family protein | YT1_RS18145 | Not Available | Negative | 3716646 - 3717878 | 46846.0 |
| ferredoxin reductase | YT1_RS18150 | Not Available | Negative | 3717914 - 3719044 | 40819.7 |
| duf6912 family protein | YT1_RS18155 | Not Available | Negative | 3719142 - 3719654 | 18124.2 |
| ws/dgat/mgat family o-acyltransferase | YT1_RS18160 | Not Available | Negative | 3719658 - 3721070 | 51467.6 |
| had-ia family hydrolase | YT1_RS18165 | Not Available | Negative | 3721067 - 3721525 | 15604.6 |
| rv3235 family protein | YT1_RS18170 | Not Available | Positive | 3721698 - 3722201 | 18575.6 |
| preprotein translocase subunit seca | YT1_RS18175 | Not Available | Negative | 3722242 - 3725085 | 104929.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


