Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| winged helix-turn-helix transcriptional regulator | YT1_RS17970 | Not Available | Positive | 3683652 - 3684203 | 20011.0 |
| alpha/beta fold hydrolase | YT1_RS17975 | Not Available | Positive | 3684200 - 3684976 | 28135.7 |
| mgmt family protein | YT1_RS17980 | Not Available | Positive | 3684977 - 3685273 | 10557.6 |
| ntp transferase domain-containing protein | YT1_RS17990 | Not Available | Positive | 3685706 - 3687442 | 58842.6 |
| fusc family protein | YT1_RS17995 | Not Available | Negative | 3687453 - 3689042 | 54488.8 |
| sirohydrochlorin chelatase | YT1_RS18000 | Not Available | Negative | 3689108 - 3689812 | 24125.1 |
| uroporphyrinogen-iii synthase | YT1_RS18005 | Not Available | Negative | 3689858 - 3691069 | 42267.7 |
| nitrite reductase small subunit nird | YT1_RS18010 | Not Available | Negative | 3691066 - 3691488 | 15153.2 |
| nitrite reductase large subunit nirb | YT1_RS18015 | Not Available | Negative | 3691545 - 3694058 | 87446.4 |
| mfs transporter | YT1_RS18020 | Not Available | Negative | 3694103 - 3695566 | 51061.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


