Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa synthetase | YT1_RS17870 | Not Available | Positive | 3657501 - 3659144 | 58740.2 |
| Trna-met | Not Available | Not Available | Positive | 3659197 - 3659273 | Not Available |
| transglycosylase family protein | YT1_RS17880 | Not Available | Positive | 3659708 - 3660271 | 18393.2 |
| upf0182 family protein | YT1_RS17885 | Not Available | Negative | 3660340 - 3663336 | 108378.0 |
| ppa1309 family protein | YT1_RS17890 | Not Available | Positive | 3663493 - 3664098 | 21292.7 |
| pdz domain-containing protein | YT1_RS17895 | Not Available | Negative | 3664113 - 3665138 | 34524.0 |
| zinc-dependent metalloprotease | YT1_RS17900 | Not Available | Positive | 3665227 - 3666723 | 51965.8 |
| hypothetical protein | YT1_RS17905 | Not Available | Positive | 3666818 - 3667666 | 29827.0 |
| abc1 kinase family protein | YT1_RS17910 | Not Available | Positive | 3667714 - 3669045 | 48279.7 |
| whib family transcriptional regulator | YT1_RS17915 | Not Available | Negative | 3669062 - 3669340 | 10329.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


