Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | YT1_RS17615 | Not Available | Positive | 3614018 - 3615079 | 35918.9 |
| class 1b ribonucleoside-diphosphate reductase subunit beta | YT1_RS17620 | Not Available | Negative | 3615153 - 3616160 | 38190.5 |
| class 1b ribonucleoside-diphosphate reductase subunit alpha | YT1_RS17625 | Not Available | Negative | 3616205 - 3618286 | 78971.5 |
| class ib ribonucleoside-diphosphate reductase assembly flavoprotein nrdi | YT1_RS17630 | Not Available | Negative | 3618462 - 3618890 | 15916.9 |
| redoxin nrdh | YT1_RS17635 | Not Available | Negative | 3618961 - 3619191 | 8304.9 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | YT1_RS17640 | Not Available | Negative | 3619385 - 3621499 | 74885.7 |
| fad binding domain-containing protein | YT1_RS17645 | Not Available | Negative | 3621496 - 3622485 | 34720.6 |
| 2fe-2s iron-sulfur cluster-binding protein | YT1_RS17650 | Not Available | Negative | 3622482 - 3623030 | 19538.9 |
| nad(p)h-dependent oxidoreductase | YT1_RS17655 | Not Available | Negative | 3623171 - 3623731 | 18984.5 |
| tetr/acrr family transcriptional regulator | YT1_RS17660 | Not Available | Positive | 3623819 - 3624448 | 22447.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


