Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thump-like domain-containing protein | YT1_RS17565 | Not Available | Negative | 3601646 - 3602803 | 41154.5 |
| class i sam-dependent methyltransferase | YT1_RS17570 | Not Available | Negative | 3602805 - 3603776 | 35637.0 |
| enoyl-coa hydratase/isomerase family protein | YT1_RS17575 | Not Available | Negative | 3603830 - 3604609 | 27011.4 |
| nudix hydrolase | YT1_RS17580 | Not Available | Negative | 3604620 - 3605447 | 29689.9 |
| abc transporter atp-binding protein | YT1_RS17585 | Not Available | Negative | 3605700 - 3606533 | 30058.1 |
| glycogen debranching protein glgx | YT1_RS17590 | Not Available | Positive | 3606672 - 3608744 | 75906.1 |
| peptidyl-trna hydrolase | YT1_RS17595 | Not Available | Negative | 3608745 - 3609518 | 26932.1 |
| phosphoserine phosphatase serb | YT1_RS17600 | Not Available | Negative | 3609595 - 3610809 | 42299.8 |
| cytochrome c oxidase subunit i | YT1_RS17605 | Not Available | Negative | 3610984 - 3612738 | 65307.0 |
| abc transporter substrate-binding protein | YT1_RS17610 | Not Available | Positive | 3612997 - 3613986 | 34845.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


