Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hu family dna-binding protein | YT1_RS17320 | Not Available | Negative | 3550724 - 3551461 | 24744.3 |
| 3-isopropylmalate dehydratase small subunit | YT1_RS17325 | Not Available | Negative | 3551631 - 3552227 | 21887.9 |
| 3-isopropylmalate dehydratase large subunit | YT1_RS17330 | Not Available | Negative | 3552254 - 3553681 | 50406.1 |
| iclr family transcriptional regulator | YT1_RS17335 | Not Available | Positive | 3553802 - 3554503 | 24485.7 |
| pyridoxamine 5'-phosphate oxidase family protein | YT1_RS17340 | Not Available | Positive | 3554545 - 3555087 | 20142.1 |
| duf5302 domain-containing protein | YT1_RS27350 | Not Available | Positive | 3555134 - 3555301 | 6399.39 |
| Trna-glu | Not Available | Not Available | Positive | 3555358 - 3555433 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 3555493 - 3555568 | Not Available |
| Trna-gln | Not Available | Not Available | Positive | 3555661 - 3555732 | Not Available |
| glutamate--trna ligase | YT1_RS17360 | Not Available | Negative | 3555895 - 3557367 | 54543.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


