Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phoh family protein | YT1_RS17120 | Not Available | Negative | 3508054 - 3509121 | 38058.8 |
| tetr/acrr family transcriptional regulator | YT1_RS17125 | Not Available | Negative | 3509184 - 3509858 | 24032.0 |
| mfs transporter | YT1_RS17130 | Not Available | Positive | 3509986 - 3511560 | 52702.8 |
| alpha/beta hydrolase family protein | YT1_RS17135 | Not Available | Negative | 3511565 - 3512356 | 28130.5 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | YT1_RS17140 | Not Available | Negative | 3512370 - 3513131 | 26168.5 |
| molecular chaperone dnaj | YT1_RS17145 | Not Available | Negative | 3513141 - 3514292 | 40435.0 |
| heat-inducible transcriptional repressor hrca | YT1_RS17150 | Not Available | Negative | 3514365 - 3515408 | 37072.5 |
| type ii toxin-antitoxin system vapb family antitoxin | YT1_RS17155 | Not Available | Positive | 3515558 - 3515893 | 12747.1 |
| radical sam family heme chaperone hemw | YT1_RS17160 | Not Available | Negative | 3516037 - 3517239 | 41715.0 |
| nitrite/sulfite reductase | YT1_RS17165 | Not Available | Positive | 3517704 - 3519431 | 64168.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


