Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3145 domain-containing protein | YT1_RS16970 | Not Available | Negative | 3481282 - 3481791 | 18281.6 |
| serine hydrolase domain-containing protein | YT1_RS16975 | Not Available | Negative | 3481895 - 3482725 | 29360.6 |
| ndma-dependent alcohol dehydrogenase | YT1_RS16980 | Not Available | Negative | 3482763 - 3483890 | 39857.4 |
| hypothetical protein | YT1_RS16985 | Not Available | Positive | 3484146 - 3484349 | 7143.85 |
| mbl fold metallo-hydrolase | YT1_RS16990 | Not Available | Positive | 3484625 - 3486229 | 58502.1 |
| class i sam-dependent methyltransferase | YT1_RS16995 | Not Available | Negative | 3486456 - 3487295 | 30236.9 |
| sigma-70 family rna polymerase sigma factor | YT1_RS17000 | Not Available | Positive | 3487486 - 3488121 | 23175.4 |
| arsi/cadi family heavy metal resistance metalloenzyme | YT1_RS17005 | Not Available | Negative | 3488192 - 3488656 | 16253.8 |
| pig-l deacetylase family protein | YT1_RS17010 | Not Available | Positive | 3488847 - 3489587 | 26745.5 |
| Trna-met | Not Available | Not Available | Positive | 3489603 - 3489679 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


