Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nif3-like dinuclear metal center hexameric protein | YT1_RS16875 | Not Available | Negative | 3460234 - 3461367 | 39845.1 |
| had hydrolase-like protein | YT1_RS16880 | Not Available | Positive | 3461484 - 3462185 | 24675.1 |
| low molecular weight protein-tyrosine-phosphatase | YT1_RS16885 | Not Available | Positive | 3462175 - 3462642 | 17330.6 |
| surf1 family protein | YT1_RS16890 | Not Available | Positive | 3462671 - 3463510 | 30451.3 |
| duf5655 domain-containing protein | YT1_RS16895 | Not Available | Positive | 3463534 - 3463893 | 13079.5 |
| hypothetical protein | YT1_RS27345 | Not Available | Positive | 3463986 - 3464126 | 4862.04 |
| amp-dependent synthetase/ligase | YT1_RS16900 | Not Available | Negative | 3464310 - 3466148 | 66649.4 |
| lipase family protein | YT1_RS16905 | Not Available | Negative | 3466209 - 3467393 | 41914.4 |
| hypothetical protein | YT1_RS16910 | Not Available | Positive | 3467606 - 3467818 | 8065.43 |
| duf1254 domain-containing protein | YT1_RS16915 | Not Available | Positive | 3468004 - 3469437 | 53086.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


