Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS16825 | Not Available | Positive | 3453080 - 3453514 | 14733.5 |
| prolyl aminopeptidase | YT1_RS16830 | Not Available | Positive | 3453514 - 3454473 | 35467.8 |
| chap domain-containing protein | YT1_RS16835 | Not Available | Negative | 3454477 - 3455037 | 20154.7 |
| rnb domain-containing ribonuclease | YT1_RS16840 | Not Available | Negative | 3455072 - 3456481 | 49970.7 |
| hypothetical protein | YT1_RS16845 | Not Available | Negative | 3456498 - 3456677 | 6670.5 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 3456890 - 3457302 | Not Available |
| duf1697 domain-containing protein | YT1_RS16855 | Not Available | Positive | 3457359 - 3457883 | 18731.4 |
| hypothetical protein | YT1_RS16860 | Not Available | Negative | 3457927 - 3458124 | 7589.46 |
| bifunctional rnase h/acid phosphatase | YT1_RS16865 | Not Available | Negative | 3458321 - 3459454 | 39984.2 |
| zinc ribbon domain-containing protein | YT1_RS16870 | Not Available | Negative | 3459412 - 3460149 | 27196.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


