Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid permease | YT1_RS16775 | Not Available | Negative | 3436887 - 3438428 | 53727.4 |
| lrp/asnc family transcriptional regulator | YT1_RS16780 | Not Available | Positive | 3438645 - 3439154 | 18551.5 |
| leu/phe/val dehydrogenase | YT1_RS16785 | Not Available | Negative | 3439301 - 3440374 | 36606.4 |
| indolepyruvate ferredoxin oxidoreductase family protein | YT1_RS16790 | Not Available | Negative | 3440492 - 3443953 | 123271.0 |
| pasta domain-containing protein | YT1_RS16795 | Not Available | Positive | 3444533 - 3444853 | 11491.6 |
| hydroxyethylthiazole kinase | YT1_RS16800 | Not Available | Negative | 3444873 - 3445715 | 27919.2 |
| bifunctional | YT1_RS16805 | Not Available | Negative | 3445771 - 3448782 | 108485.0 |
| glutamine synthetase family protein | YT1_RS16810 | Not Available | Negative | 3448901 - 3450238 | 49814.6 |
| alpha/beta hydrolase | YT1_RS16815 | Not Available | Negative | 3450323 - 3451855 | 53376.2 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | YT1_RS16820 | Not Available | Positive | 3452140 - 3452988 | 29519.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


