Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxoglutarate dehydrogenase, e2 component, dihydrolipoamide succinyltransferase | YT1_RS16725 | Not Available | Positive | 3426050 - 3427813 | 60748.3 |
| tigr01777 family oxidoreductase | YT1_RS16730 | Not Available | Positive | 3427925 - 3428815 | 31225.5 |
| lipoyl(octanoyl) transferase lipb | YT1_RS16735 | Not Available | Positive | 3428862 - 3429644 | 28068.3 |
| lipoyl synthase | YT1_RS16740 | Not Available | Positive | 3429711 - 3430721 | 37472.6 |
| duf4191 domain-containing protein | YT1_RS16745 | Not Available | Positive | 3430778 - 3431518 | 26911.4 |
| rdd family protein | YT1_RS16750 | Not Available | Negative | 3431591 - 3432067 | 16658.4 |
| type i glutamate--ammonia ligase | YT1_RS16755 | Not Available | Positive | 3432280 - 3433716 | 53524.6 |
| hypothetical protein | YT1_RS16760 | Not Available | Negative | 3433821 - 3434966 | 41659.4 |
| metal-dependent hydrolase | YT1_RS16765 | Not Available | Negative | 3434979 - 3435905 | 35332.3 |
| tetr/acrr family transcriptional regulator | YT1_RS16770 | Not Available | Positive | 3436149 - 3436763 | 22857.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


