Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asparagine synthase (glutamine-hydrolyzing) | YT1_RS16675 | Not Available | Positive | 3415466 - 3417391 | 72061.0 |
| carbohydrate kinase family protein | YT1_RS16680 | Not Available | Negative | 3417455 - 3418426 | 34125.7 |
| hesb/isca family protein | YT1_RS16685 | Not Available | Negative | 3418540 - 3418890 | 12327.3 |
| duf3043 domain-containing protein | YT1_RS16690 | Not Available | Positive | 3419036 - 3419701 | 24390.0 |
| hypothetical protein | YT1_RS16695 | Not Available | Negative | 3419751 - 3419966 | 8050.65 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | YT1_RS16700 | Not Available | Positive | 3420101 - 3421204 | 37540.6 |
| adenosylcobinamide-gdp ribazoletransferase | YT1_RS16705 | Not Available | Positive | 3421204 - 3421956 | 24139.9 |
| branched-chain amino acid aminotransferase | YT1_RS16710 | Not Available | Negative | 3421972 - 3423075 | 39990.4 |
| glycine cleavage system aminomethyltransferase gcvt | YT1_RS16715 | Not Available | Negative | 3423109 - 3424209 | 38590.8 |
| leucyl aminopeptidase | YT1_RS16720 | Not Available | Positive | 3424284 - 3425792 | 51318.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


