Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-(1->6)-mannopyranosyltransferase a | YT1_RS16525 | Not Available | Positive | 3386730 - 3388400 | 59669.8 |
| phytoene/squalene synthase family protein | YT1_RS16530 | Not Available | Positive | 3388397 - 3389305 | 33440.0 |
| rv2175c family dna-binding protein | YT1_RS16535 | Not Available | Negative | 3389316 - 3389687 | 13560.4 |
| hypothetical protein | YT1_RS27695 | Not Available | Negative | 3389723 - 3389986 | 8591.78 |
| stk1 family pasta domain-containing ser/thr kinase | YT1_RS16545 | Not Available | Positive | 3390121 - 3392121 | 69526.7 |
| class ii 3-deoxy-7-phosphoheptulonate synthase | YT1_RS16550 | Not Available | Negative | 3392135 - 3393520 | 50495.1 |
| polyadenylate-specific 3'-exoribonuclease as | YT1_RS16555 | Not Available | Negative | 3393611 - 3394102 | 18942.5 |
| lysophospholipid acyltransferase family protein | YT1_RS16560 | Not Available | Negative | 3394247 - 3394984 | 27081.8 |
| rok family protein | YT1_RS16565 | Not Available | Negative | 3395116 - 3396090 | 33116.6 |
| hypothetical protein | YT1_RS16570 | Not Available | Negative | 3396104 - 3396544 | 15093.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


