Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3040 domain-containing protein | YT1_RS16475 | Not Available | Negative | 3376563 - 3376979 | 14672.0 |
| sav_6107 family hepn domain-containing protein | YT1_RS16480 | Not Available | Negative | 3377198 - 3377758 | 19349.5 |
| gnat family n-acetyltransferase | YT1_RS16485 | Not Available | Positive | 3377934 - 3378533 | 22455.7 |
| phytoene desaturase family protein | YT1_RS16490 | Not Available | Positive | 3378544 - 3380133 | 56219.0 |
| carotenoid biosynthesis protein | YT1_RS16495 | Not Available | Positive | 3380130 - 3380936 | 28230.5 |
| lppm family (lipo)protein | YT1_RS16500 | Not Available | Positive | 3380968 - 3381669 | 24436.9 |
| glycosyltransferase | YT1_RS16505 | Not Available | Positive | 3381673 - 3382806 | 39132.2 |
| methylenetetrahydrofolate reductase | YT1_RS16510 | Not Available | Negative | 3382859 - 3383767 | 33400.9 |
| polyprenyl synthetase family protein | YT1_RS16515 | Not Available | Positive | 3384035 - 3385081 | 36883.6 |
| phytoene desaturase family protein | YT1_RS16520 | Not Available | Positive | 3385081 - 3386613 | 54292.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


