Rhodococcus ruber strain YC-YT1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YC-YT1 is a Gram-positive bacterium predominantly found in soil environments. This strain is characterized by the presence of flagella, which may contribute to its motility and ability to adapt to various soil conditions. Notably, it possesses a single replicon, which is indicative of its genomic organization. The genomic information for this strain is cataloged under the accession number NZ_CP023714.1. Rhodococcus species, including R. ruber, are known for their metabolic versatility, allowing them to degrade a wide range of organic compounds. This adaptability makes them important in bioremediation processes, where they can break down pollutants in contaminated soils. The ability to thrive in diverse soil habitats suggests that R. ruber strain YC-YT1 may play a significant role in soil ecology, potentially influencing nutrient cycling and the degradation of organic materials. Overall, the traits of Rhodococcus ruber strain YC-YT1 highlight its ecological importance and potential applications in environmental microbiology, particularly in the context of soil health and bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YC-YT1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YC-YT1 chromosome, complete genome.

Gene Summary

Adenine Count

838143 bp

Thymine Count

839814 bp

Guanine Count

1998922 bp

Cytosine Count

1992973 bp

Genome Length

5669852 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseYT1_RS16425Not AvailableNegative3363149 - 336430339452.9
putative lipid ii flippase ftswYT1_RS16430Not AvailableNegative3364300 - 336579052964.0
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseYT1_RS16435Not AvailableNegative3365787 - 336722049059.3
phospho-n-acetylmuramoyl-pentapeptide- transferaseYT1_RS16440Not AvailableNegative3367297 - 336837937921.7
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseYT1_RS16445Not AvailableNegative3368376 - 336990251734.8
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseYT1_RS16450Not AvailableNegative3369899 - 337148554259.3
peptidoglycan d,d-transpeptidase ftsi family proteinYT1_RS16455Not AvailableNegative3371714 - 337356165027.5
hypothetical proteinYT1_RS16460Not AvailableNegative3373624 - 337425620884.6
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhYT1_RS16465Not AvailableNegative3374394 - 337541036558.6
division/cell wall cluster transcriptional repressor mrazYT1_RS16470Not AvailableNegative3375662 - 337609315785.5

Displaying genes 3111 – 3120 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.