Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoleucine--trna ligase | YT1_RS16375 | Not Available | Negative | 3352090 - 3355242 | 117179.0 |
| hypothetical protein | YT1_RS16380 | Not Available | Negative | 3355532 - 3355753 | 7394.33 |
| diviva domain-containing protein | YT1_RS16385 | Not Available | Negative | 3355796 - 3356647 | 30546.6 |
| yggt family protein | YT1_RS16390 | Not Available | Negative | 3356796 - 3357086 | 11109.4 |
| cell division protein sepf | YT1_RS16395 | Not Available | Negative | 3357201 - 3357869 | 24856.8 |
| yggs family pyridoxal phosphate-dependent enzyme | YT1_RS16400 | Not Available | Negative | 3357901 - 3358638 | 25868.5 |
| peptidoglycan editing factor pgef | YT1_RS16405 | Not Available | Negative | 3358739 - 3359494 | 26391.7 |
| cell division protein ftsz | YT1_RS16410 | Not Available | Negative | 3359491 - 3360687 | 40808.5 |
| cell division protein ftsq/divib | YT1_RS16415 | Not Available | Negative | 3360889 - 3361623 | 25479.9 |
| udp-n-acetylmuramate--l-alanine ligase | YT1_RS16420 | Not Available | Negative | 3361620 - 3363152 | 53479.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


