Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | YT1_RS16280 | Not Available | Positive | 3331269 - 3332273 | 35730.4 |
| tetr/acrr family transcriptional regulator | YT1_RS16285 | Not Available | Negative | 3332239 - 3332907 | 23797.9 |
| malto-oligosyltrehalose trehalohydrolase | YT1_RS16290 | Not Available | Positive | 3332997 - 3334742 | 64562.3 |
| mfs transporter | YT1_RS16295 | Not Available | Negative | 3334747 - 3336270 | 50979.0 |
| tetr/acrr family transcriptional regulator | YT1_RS16300 | Not Available | Positive | 3336366 - 3336902 | 19093.8 |
| hypothetical protein | YT1_RS16305 | Not Available | Positive | 3336983 - 3337246 | 9877.59 |
| threonine ammonia-lyase ilva | YT1_RS16310 | Not Available | Negative | 3337304 - 3338626 | 45988.1 |
| nitroreductase family deazaflavin-dependent oxidoreductase | YT1_RS16315 | Not Available | Negative | 3338742 - 3339176 | 16133.0 |
| hypothetical protein | YT1_RS16320 | Not Available | Positive | 3339336 - 3339560 | 8001.79 |
| dna polymerase iii subunit alpha | YT1_RS16325 | Not Available | Negative | 3339583 - 3343119 | 128956.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


