Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS16180 | Not Available | Negative | 3298359 - 3298685 | 11564.9 |
| dethiobiotin synthase | YT1_RS16185 | Not Available | Negative | 3298933 - 3299628 | 23103.1 |
| 8-amino-7-oxononanoate synthase | YT1_RS16190 | Not Available | Negative | 3299625 - 3300764 | 39301.7 |
| adenosylmethionine--8-amino-7-oxononanoate transaminase | YT1_RS16195 | Not Available | Negative | 3300844 - 3302124 | 45197.7 |
| glycogen debranching protein glgx | YT1_RS16200 | Not Available | Positive | 3302228 - 3304537 | 85371.7 |
| malto-oligosyltrehalose synthase | YT1_RS16205 | Not Available | Positive | 3304534 - 3306894 | 84968.0 |
| chorismate mutase | YT1_RS16210 | Not Available | Negative | 3307301 - 3307558 | 9362.43 |
| abc transporter permease | YT1_RS16215 | Not Available | Negative | 3307681 - 3308472 | 27581.7 |
| abc transporter permease | YT1_RS16220 | Not Available | Negative | 3308469 - 3309242 | 26806.3 |
| daunorubicin resistance protein drra family abc transporter atp-binding protein | YT1_RS16225 | Not Available | Negative | 3309239 - 3310201 | 33732.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


