Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | YT1_RS16040 | Not Available | Negative | 3272859 - 3273998 | 36698.1 |
| hypothetical protein | YT1_RS27325 | Not Available | Negative | 3274028 - 3274183 | 5307.8 |
| imidazoleglycerol-phosphate dehydratase hisb | YT1_RS16045 | Not Available | Negative | 3274183 - 3274815 | 22947.2 |
| histidinol-phosphate transaminase | YT1_RS16050 | Not Available | Negative | 3274812 - 3275936 | 40292.8 |
| histidinol dehydrogenase | YT1_RS16055 | Not Available | Negative | 3275933 - 3277255 | 46250.7 |
| helix-turn-helix domain-containing protein | YT1_RS16060 | Not Available | Positive | 3277386 - 3277769 | 14198.8 |
| pha/phb synthase family protein | YT1_RS16065 | Not Available | Positive | 3277945 - 3279633 | 61461.8 |
| hypothetical protein | YT1_RS16070 | Not Available | Positive | 3279718 - 3280134 | 14191.4 |
| duf3141 domain-containing protein | YT1_RS16075 | Not Available | Positive | 3280212 - 3281336 | 40112.8 |
| family 1 glycosylhydrolase | YT1_RS16080 | Not Available | Positive | 3281333 - 3282607 | 46506.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


