Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tm2 domain-containing protein | YT1_RS15945 | Not Available | Negative | 3255696 - 3256619 | 31010.7 |
| prolipoprotein diacylglyceryl transferase | YT1_RS15950 | Not Available | Negative | 3256616 - 3257653 | 36672.1 |
| tryptophan synthase subunit alpha | YT1_RS15955 | Not Available | Negative | 3257650 - 3258459 | 28031.4 |
| tryptophan synthase subunit beta | YT1_RS15960 | Not Available | Negative | 3258456 - 3259715 | 44167.0 |
| indole-3-glycerol phosphate synthase trpc | YT1_RS15965 | Not Available | Negative | 3259840 - 3260649 | 27835.4 |
| tigr02234 family membrane protein | YT1_RS15970 | Not Available | Negative | 3260729 - 3261415 | 22992.1 |
| anthranilate synthase component i | YT1_RS15975 | Not Available | Negative | 3261412 - 3262995 | 56487.6 |
| peroxiredoxin | YT1_RS15980 | Not Available | Positive | 3263054 - 3263524 | 16871.9 |
| dioxygenase | YT1_RS15985 | Not Available | Negative | 3263528 - 3264295 | 27423.8 |
| nad-dependent epimerase/dehydratase family protein | YT1_RS15990 | Not Available | Positive | 3264412 - 3265470 | 38123.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


